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    BMCBI
    2007
    148views more  BMCBI 2007»
    p53FamTaG: a database resource of human p53, p63 and p73 direct target genes combining in silico prediction and microarray data
    13 years 7 months ago
    p53FamTaG: a database resource of human p53, p63 and p73 direct target genes combining in silico prediction and microarray data
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    Background: The p53 gene family consists of the three genes p53, p63 and p73, which have polyhedral non-overlapping functions in pivotal cellular processes such as DNA synthesis a...
    Elisabetta Sbisà, Domenico Catalano, Giorgi...
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    BMCBI
    2007
    132views more  BMCBI 2007»
    Analysis of probe level patterns in Affymetrix microarray data
    13 years 7 months ago
    Analysis of probe level patterns in Affymetrix microarray data
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    Background: Microarrays have been used extensively to analyze the expression profiles for thousands of genes in parallel. Most of the widely used methods for analyzing Affymetrix ...
    Alexander C. Cambon, Abdelnaby Khalyfa, Nigel G. F...
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    BMCBI
    2007
    173views more  BMCBI 2007»
    Predicting state transitions in the transcriptome and metabolome using a linear dynamical system model
    13 years 7 months ago
    Predicting state transitions in the transcriptome and metabolome using a linear dynamical system model
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    Background: Modelling of time series data should not be an approximation of input data profiles, but rather be able to detect and evaluate dynamical changes in the time series dat...
    Ryoko Morioka, Shigehiko Kanaya, Masami Y. Hirai, ...
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    BMCBI
    2008
    121views more  BMCBI 2008»
    ReAlignerV: Web-based genomic alignment tool with high specificity and robustness estimated by species-specific insertion sequen
    13 years 7 months ago
    ReAlignerV: Web-based genomic alignment tool with high specificity and robustness estimated by species-specific insertion sequen
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    Background: Detecting conserved noncoding sequences (CNSs) across species highlights the functional elements. Alignment procedures combined with computational prediction of transc...
    Hisakazu Iwama, Yukio Hori, Kensuke Matsumoto, Koj...
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    BMCBI
    2005
    201views more  BMCBI 2005»
    Principal component analysis for predicting transcription-factor binding motifs from array-derived data
    13 years 7 months ago
    Principal component analysis for predicting transcription-factor binding motifs from array-derived data
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    Background: The responses to interleukin 1 (IL-1) in human chondrocytes constitute a complex regulatory mechanism, where multiple transcription factors interact combinatorially to...
    Yunlong Liu, Matthew P. Vincenti, Hiroki Yokota
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