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BMCBI
2008
100views more  BMCBI 2008»
13 years 8 months ago
Extracting transcription factor binding sites from unaligned gene sequences with statistical models
Background: Transcription factor binding sites (TFBSs) are crucial in the regulation of gene transcription. Recently, chromatin immunoprecipitation followed by cDNA microarray hyb...
Chung-Chin Lu, Wei-Hao Yuan, Te-Ming Chen
BMCBI
2010
108views more  BMCBI 2010»
13 years 8 months ago
An intuitionistic approach to scoring DNA sequences against transcription factor binding site motifs
Background: Transcription factors (TFs) control transcription by binding to specific regions of DNA called transcription factor binding sites (TFBSs). The identification of TFBSs ...
Fernando Garcia-Alcalde, Armando Blanco, Adrian J....
APBC
2004
116views Bioinformatics» more  APBC 2004»
13 years 10 months ago
Structure-Function Relationship in DNA Sequence Recognition by Transcription Factors
Transcription factors play essential role in the gene regulation in higher organisms, binding to multiple target sequences and regulating multiple genes in a complex manner. In or...
Akinori Sarai, Samuel Selvaraj, M. Michael Gromiha...
ICML
2004
IEEE
14 years 9 months ago
Dynamic conditional random fields: factorized probabilistic models for labeling and segmenting sequence data
In sequence modeling, we often wish to represent complex interaction between labels, such as when performing multiple, cascaded labeling tasks on the same sequence, or when longra...
Charles A. Sutton, Khashayar Rohanimanesh, Andrew ...
TCS
1998
13 years 8 months ago
Merit Factors and Morse Sequences
Abstract. We show that Turyn’s conjecture, arising from the Theory of Error Correcting Codes, has an equivalent formulation in Dynamical Systems Theory. In particular, Turyn’s ...
T. Downarowicz, Y. Lacroix