54 search results - page 10 / 11 » FastPCMSA: An Improved Parallel Algorithm for the Constraine... |
SASP
2009
IEEE
14 years 2 months ago
2009
IEEE
—This paper describes a multi-threaded parallel design and implementation of the Smith-Waterman (SM) algorithm on compute unified device architecture (CUDA)-compatible graphic pr...
FPL
2010
Springer
13 years 5 months ago
2010
Springer
We demonstrate how Field Programmable Gate Arrays (FPGAs) may be used to address the computing challenges associated with assembling genome sequences from recent ultra-high-through...
IPPS
2010
IEEE
13 years 5 months ago
2010
IEEE
Abstract--A hybrid MPI/Pthreads parallelization was implemented in the RAxML phylogenetics code. New MPI code was added to the existing Pthreads production code to exploit parallel...
ALMOB
2006
13 years 7 months ago
2006
The main goal of the motif finding problem is to detect novel, over-represented unknown signals in a set of sequences (e.g. transcription factor binding sites in a genome). The mo...
BMCBI
2011
13 years 2 months ago
2011
Background: The prediction of the structure of large RNAs remains a particular challenge in bioinformatics, due to the computational complexity and low levels of accuracy of state...