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BMCBI
2006
140views more  BMCBI 2006»
13 years 8 months ago
MACSIMS : multiple alignment of complete sequences information management system
Background: In the post-genomic era, systems-level studies are being performed that seek to explain complex biological systems by integrating diverse resources from fields such as...
Julie D. Thompson, Arnaud Muller, Andrew M. Waterh...
CALCO
2009
Springer
138views Mathematics» more  CALCO 2009»
14 years 3 months ago
Kleene Monads: Handling Iteration in a Framework of Generic Effects
Abstract. Monads are a well-established tool for modelling various computational effects. They form the semantic basis of Moggi’s computational metalanguage, the metalanguage of ...
Sergey Goncharov, Lutz Schröder, Till Mossako...
ASPLOS
2006
ACM
14 years 2 months ago
Geiger: monitoring the buffer cache in a virtual machine environment
Virtualization is increasingly being used to address server management and administration issues like flexible resource allocation, service isolation and workload migration. In a...
Stephen T. Jones, Andrea C. Arpaci-Dusseau, Remzi ...
ICALP
2010
Springer
14 years 1 months ago
Thresholded Covering Algorithms for Robust and Max-min Optimization
The general problem of robust optimization is this: one of several possible scenarios will appear tomorrow, but things are more expensive tomorrow than they are today. What should...
Anupam Gupta, Viswanath Nagarajan, R. Ravi
BMCBI
2010
117views more  BMCBI 2010»
13 years 8 months ago
New decoding algorithms for Hidden Markov Models using distance measures on labellings
Background: Existing hidden Markov model decoding algorithms do not focus on approximately identifying the sequence feature boundaries. Results: We give a set of algorithms to com...
Daniel G. Brown 0001, Jakub Truszkowski