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» Filling the gap between biology and computer science
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ACMSE
2004
ACM
14 years 28 days ago
Performance evaluation of cache replacement policies for the SPEC CPU2000 benchmark suite
Replacement policy, one of the key factors determining the effectiveness of a cache, becomes even more important with latest technological trends toward highly associative caches....
Hussein Al-Zoubi, Aleksandar Milenkovic, Milena Mi...
COCO
2009
Springer
105views Algorithms» more  COCO 2009»
14 years 2 months ago
Planar Graph Isomorphism is in Log-Space
Graph Isomorphism is the prime example of a computational problem with a wide difference between the best known lower and upper bounds on its complexity. There is a significant ...
Samir Datta, Nutan Limaye, Prajakta Nimbhorkar, Th...
BIOINFORMATICS
2006
101views more  BIOINFORMATICS 2006»
13 years 7 months ago
A lock-and-key model for protein-protein interactions
Motivation: Protein-protein interaction networks are one of the major post-genomic data sources available to molecular biologists. They provide a comprehensive view of the global ...
Julie L. Morrison, Rainer Breitling, Desmond J. Hi...
BMCBI
2007
144views more  BMCBI 2007»
13 years 7 months ago
Motif kernel generated by genetic programming improves remote homology and fold detection
Background: Protein remote homology detection is a central problem in computational biology. Most recent methods train support vector machines to discriminate between related and ...
Tony Håndstad, Arne J. H. Hestnes, Pål...
ICS
2009
Tsinghua U.
14 years 2 months ago
Cancellation of loads that return zero using zero-value caches
The speed gap between processor and memory continues to limit performance. To address this problem, we explore the potential of eliminating Zero Loads—loads accessing memory loc...
Md. Mafijul Islam, Sally A. McKee, Per Stenstr&oum...