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    » Finding Dynamic Modules of Biological Regulatory Networks
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    GECCO
    2006
    Springer
    220views Optimization» more  GECCO 2006»
    Comparing evolutionary algorithms on the problem of network inference
    13 years 11 months ago
    Comparing evolutionary algorithms on the problem of network inference
    Download  www.ra.cs.uni-tuebingen.de
    In this paper, we address the problem of finding gene regulatory networks from experimental DNA microarray data. We focus on the evaluation of the performance of different evoluti...
    Christian Spieth, Rene Worzischek, Felix Streicher...
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    BMCBI
    2011
    254views Artificial Intelligence» more  BMCBI 2011»
    Reconstructing genome-wide regulatory network of E. coli using transcriptome data and predicted transcription factor activities
    12 years 11 months ago
    Reconstructing genome-wide regulatory network of E. coli using transcriptome data and predicted transcription factor activities
    Download  www.biomedcentral.com
    Background: Gene regulatory networks play essential roles in living organisms to control growth, keep internal metabolism running and respond to external environmental changes. Un...
    Yao Fu, Laura R. Jarboe, Julie A. Dickerson
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    RECOMB
    2007
    Springer
    125views Computational Biology» more  RECOMB 2007»
    An Efficient Method for Dynamic Analysis of Gene Regulatory Networks and in silico Gene Perturbation Experiments
    14 years 7 months ago
    An Efficient Method for Dynamic Analysis of Gene Regulatory Networks and in silico Gene Perturbation Experiments
    Download  infoscience.epfl.ch
    With the increasing availability of experimental data on gene-gene and protein-protein interactions, modeling of gene regulatory networks has gained a special attention lately. To ...
    Abhishek Garg, Ioannis Xenarios, Luis Mendoza, Gio...
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    CIBB
    2009
    232views Artificial Intelligence» more  CIBB 2009»
    On the Use of Temporal Formal Logic to Model Gene Regulatory Networks
    13 years 8 months ago
    On the Use of Temporal Formal Logic to Model Gene Regulatory Networks
    Download  www.i3s.unice.fr
    Modelling activities in molecular biology face the difficulty of prediction to link molecular knowledge with cell phenotypes. Even when the interaction graph between molecules is k...
    Gilles Bernot, Jean-Paul Comet
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    BMCBI
    2007
    164views more  BMCBI 2007»
    Comparison of probabilistic Boolean network and dynamic Bayesian network approaches for inferring gene regulatory networks
    13 years 7 months ago
    Comparison of probabilistic Boolean network and dynamic Bayesian network approaches for inferring gene regulatory networks
    Download  www.biomedcentral.com
    Background: The regulation of gene expression is achieved through gene regulatory networks (GRNs) in which collections of genes interact with one another and other substances in a...
    Peng Li, Chaoyang Zhang, Edward J. Perkins, Ping G...
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