362 search results - page 4 / 73 » Finding Motifs with Gaps |
RECOMB
2004
Springer
14 years 7 months ago
2004
Springer
ICALP
2007
Springer
14 years 1 months ago
2007
Springer
We study the problem of finding occurrences of motifs in vertex-colored graphs, where a motif is a multiset of colors, and an occurrence of a motif is a subset of connected vertic...
RECOMB
2001
Springer
14 years 7 months ago
2001
Springer
motif discovery problem abstracts the task of discovering short, conserved sites in genomic DNA. Pevzner and Sze recently described a precise combinatorial formulation of motif di...
BMCBI
2007
13 years 7 months ago
2007
Background: Sequence motifs representing transcription factor binding sites (TFBS) are commonly encoded as position frequency matrices (PFM) or degenerate consensus sequences (CS)...
RECOMB
2005
Springer
14 years 7 months ago
2005
Springer
Abstract. In order to guarantee that the optimal motif is found, traditional pattern-driven approaches perform an exhaustive search over all candidate motifs of length l. We develo...