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BMCBI
2007
216views more  BMCBI 2007»
13 years 7 months ago
A replica exchange Monte Carlo algorithm for protein folding in the HP model
Background: The ab initio protein folding problem consists of predicting protein tertiary structure from a given amino acid sequence by minimizing an energy function; it is one of...
Chris Thachuk, Alena Shmygelska, Holger H. Hoos
DATE
2008
IEEE
136views Hardware» more  DATE 2008»
14 years 2 months ago
A Framework of Stochastic Power Management Using Hidden Markov Model
- The effectiveness of stochastic power management relies on the accurate system and workload model and effective policy optimization. Workload modeling is a machine learning proce...
Ying Tan, Qinru Qiu
KDD
2002
ACM
154views Data Mining» more  KDD 2002»
14 years 8 months ago
Mining Protein Contact Maps
The 3D conformation of a protein may be compactly represented in a symmetrical, square, boolean matrix of pairwise, inter-residue contacts, or "contact map". The contact...
Jingjing Hu, Xiaolan Shen, Yu Shao, Chris Bystroff...
APWEB
2004
Springer
14 years 1 months ago
Improving XML Query Performance Using Social Classes
In a state-of-the-art XML database, an XML query is evaluated as a sequence of structural joins in which positions of data nodes are used to perform each individual structural joi...
Weining Zhang, Douglas Pollok
BMCBI
2008
86views more  BMCBI 2008»
13 years 7 months ago
Is plant mitochondrial RNA editing a source of phylogenetic incongruence? An answer from in silico and in vivo data sets
Background: In plant mitochondria, the post-transcriptional RNA editing process converts C to U at a number of specific sites of the mRNA sequence and usually restores phylogeneti...
Ernesto Picardi, Carla Quagliariello