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RECOMB
2006
Springer
14 years 10 months ago
Improving Prediction of Zinc Binding Sites by Modeling the Linkage Between Residues Close in Sequence
Abstract. We describe and empirically evaluate machine learning methods for the prediction of zinc binding sites from protein sequences. We start by observing that a data set consi...
Sauro Menchetti, Andrea Passerini, Paolo Frasconi,...
GCB
2005
Springer
96views Biometrics» more  GCB 2005»
14 years 3 months ago
Thermodynamics of RNA-RNA Binding
We present an extension of the standard partition function approach to RNA secondary structures that computes the probabilities Pu[i, j] that a sequence interval [i, j] is unpaired...
Ulrike Mückstein, Hakim Tafer, Jörg Hack...
RECOMB
2004
Springer
14 years 10 months ago
A discriminative model for identifying spatial cis-regulatory modules
Transcriptional regulation is mediated by the coordinated binding of transcription factors to the upstream regions of genes. In higher eukaryotes, the binding sites of cooperating...
Eran Segal, Roded Sharan
WABI
2001
Springer
162views Bioinformatics» more  WABI 2001»
14 years 2 months ago
A Simple Hyper-Geometric Approach for Discovering Putative Transcription Factor Binding Sites
A central issue in molecular biology is understanding the regulatory mechanisms that control gene expression. The recent flood of genomic and postgenomic data opens the way for co...
Yoseph Barash, Gill Bejerano, Nir Friedman
ICCSA
2007
Springer
14 years 3 months ago
On Dynamic Multicast Trees for Stormless Binding Update in Network Mobility
Mobile IP (MIP) is designed for supporting mobile nodes. The technology does not sufficiently handle NEtwork MObility (NEMO). The NEMO Basic Support (NBS) [1] ensures session conti...
Moonseong Kim, Sungchang Lee, Hyunseung Choo