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BMCBI
2007
79views more  BMCBI 2007»
13 years 10 months ago
Orthology prediction at scalable resolution by phylogenetic tree analysis
Background: Orthology is one of the cornerstones of gene function prediction. Dividing the phylogenetic relations between genes into either orthologs or paralogs is however an ove...
René T. J. M. van der Heijden, Berend Snel,...
BIOINFORMATICS
2010
109views more  BIOINFORMATICS 2010»
13 years 10 months ago
Phylogenetic networks do not need to be complex: using fewer reticulations to represent conflicting clusters
Phylogenetic trees are widely used to display estimates of how groups of species evolved. Each phylogenetic tree can be seen as a collection of clusters, subgroups of the species ...
Leo van Iersel, Steven Kelk, Regula Rupp, Daniel H...
BMCBI
2007
162views more  BMCBI 2007»
13 years 10 months ago
Three-Dimensional Phylogeny Explorer: Distinguishing paralogs, lateral transfer, and violation of "molecular clock" assumption w
Background: Construction and interpretation of phylogenetic trees has been a major research topic for understanding the evolution of genes. Increases in sequence data and complexi...
Namshin Kim, Christopher Lee
RECOMB
2012
Springer
12 years 6 days ago
Recovering the Tree-Like Trend of Evolution Despite Extensive Lateral Genetic Transfer: A Probabilistic Analysis
Abstract. Lateral gene transfer (LGT) is a common mechanism of nonvertical evolution where genetic material is transferred between two more or less distantly related organisms. It ...
Sebastien Roch, Sagi Snir
IGARSS
2009
13 years 7 months ago
Within- and Between-class Variability of Spectrally Similar Tree Species
In this paper, a comparison is made through evaluating the withinand between-class species variability for the original, the first derivative and second derivative spectra. For ea...
Pravesh Debba, Moses Azong Cho, Renaud Mathieu