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ISBRA
2011
Springer
13 years 1 months ago
Query-Adaptive Ranking with Support Vector Machines for Protein Homology Prediction
Abstract. Protein homology prediction is a crucial step in templatebased protein structure prediction. The functions that rank the proteins in a database according to their homolog...
Yan Fu, Rong Pan, Qiang Yang, Wen Gao
BIOINFORMATICS
2012
12 years 15 days ago
MolClass: a web portal to interrogate diverse small molecule screen datasets with different computational models
Summary: The MolClass toolkit and data portal generates computational models from user-defined small molecule datasets based on structural features identified in hit and non-hit m...
Jan Wildenhain, Nicholas FitzGerald, Mike Tyers
ASAP
2007
IEEE
122views Hardware» more  ASAP 2007»
14 years 4 months ago
Parallelizing HMMER for Hardware Acceleration on FPGAs
Profile based Hidden Markov Model is a widely used tool in bioinformatics. While being very valuable to biologists, it is extremely compute intensive and suffers from prohibitive...
Steven Derrien, Patrice Quinton
DNA
2007
Springer
127views Bioinformatics» more  DNA 2007»
14 years 4 months ago
Discrete Simulations of Biochemical Dynamics
Abstract. Metabolic P systems, shortly MP systems, are a special class of P systems, introduced for expressing biological metabolism. Their dynamics are computed by metabolic algor...
Vincenzo Manca
DNA
2004
Springer
126views Bioinformatics» more  DNA 2004»
14 years 3 months ago
DNA Extraction by XPCR
The extraction of DNA strands including a given sequence of bases is a crucial step in the Adleman-Lipton extract model of DNA computing. In this paper, a special type of PCR is pr...
Giuditta Franco, Cinzia Giagulli, Carlo Laudanna, ...