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» From molecular interactions to gates: a systematic approach
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BMCBI
2010
127views more  BMCBI 2010»
13 years 7 months ago
PeptideMine - A webserver for the design of peptides for protein-peptide binding studies derived from protein-protein interactom
Background: Signal transduction events often involve transient, yet specific, interactions between structurally conserved protein domains and polypeptide sequences in target prote...
Khader Shameer, Lalima L. Madan, Shivamurthy Veera...
BMCBI
2007
151views more  BMCBI 2007»
13 years 7 months ago
Identification of hot regions in protein-protein interactions by sequential pattern mining
Background: Identification of protein interacting sites is an important task in computational molecular biology. As more and more protein sequences are deposited without available...
Chen-Ming Hsu, Chien-Yu Chen, Baw-Jhiune Liu, Chih...
COMPSAC
2006
IEEE
14 years 1 months ago
Preventing Feature Interactions by Constraints
As software systems evolve by adding new extensions some unexpected conflicts may occur, which is known as the Feature Interaction Problem (FIP). FIP is a threat to the dependabil...
Jihong Zuo, Qianxiang Wang, Hong Mei
ESORICS
2007
Springer
14 years 1 months ago
Obligations and Their Interaction with Programs
Obligations are pervasive in modern systems, often linked to access control decisions. We present a very general model of obligations as objects with state, and discuss its interac...
Daniel J. Dougherty, Kathi Fisler, Shriram Krishna...
BIOCOMP
2007
13 years 9 months ago
Interaction Models for Biochemical Reactions
Abstract—This paper presents a stochastic modelling framework for complex biochemical reaction networks from a component-based perspective. Our approach takes into account the di...
Mila E. Majster-Cederbaum, Nils Semmelrock, Verena...