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BMCBI
2007
79views more  BMCBI 2007»
13 years 10 months ago
Orthology prediction at scalable resolution by phylogenetic tree analysis
Background: Orthology is one of the cornerstones of gene function prediction. Dividing the phylogenetic relations between genes into either orthologs or paralogs is however an ove...
René T. J. M. van der Heijden, Berend Snel,...
AC
2003
Springer
14 years 3 months ago
Generic Haskell: Applications
Generic Haskell is an extension of Haskell that supports the construction of generic programs. These lecture notes discuss three advanced generic programming applications: generic ...
Ralf Hinze, Johan Jeuring
APPROX
2008
Springer
100views Algorithms» more  APPROX 2008»
13 years 12 months ago
Optimal Random Matchings on Trees and Applications
In this paper we will consider tight upper- and lower-bounds on the weight of the optimal matching for random point sets distributed among the leaves of a tree, as a function of it...
Jeff Abrahamson, Béla Csaba, Ali Shokoufand...
ECCB
2008
IEEE
14 years 4 months ago
Connect the dots: exposing hidden protein family connections from the entire sequence tree
Motivation: Mapping of remote evolutionary links is a classic computational problem of much interest. Relating protein families allows for functional and structural inference on u...
Yaniv Loewenstein, Michal Linial
BMCBI
2007
95views more  BMCBI 2007»
13 years 10 months ago
Phylogenetic tree information aids supervised learning for predicting protein-protein interaction based on distance matrices
Background: Protein-protein interactions are critical for cellular functions. Recently developed computational approaches for predicting protein-protein interactions utilize co-ev...
Roger A. Craig, Li Liao