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BMCBI
2007
130views more  BMCBI 2007»
13 years 7 months ago
Differential analysis for high density tiling microarray data
Background: High density oligonucleotide tiling arrays are an effective and powerful platform for conducting unbiased genome-wide studies. The ab initio probe selection method emp...
Srinka Ghosh, Heather A. Hirsch, Edward A. Sekinge...
BMCBI
2004
158views more  BMCBI 2004»
13 years 7 months ago
Improvement of alignment accuracy utilizing sequentially conserved motifs
Background: Multiple sequence alignment algorithms are very important tools in molecular biology today. Accurate alignment of proteins is central to several areas such as homology...
Saikat Chakrabarti, Nitin Bhardwaj, Prem A. Anand,...
POPL
2010
ACM
14 years 5 months ago
Toward a Verified Relational Database Management System
We report on our experience implementing a lightweight, fully verified relational database management system (RDBMS). The functional specification of RDBMS behavior, RDBMS impleme...
Avraham Shinnar, Greg Morrisett, J. Gregory Malech...
TPHOL
2009
IEEE
14 years 2 months ago
A Formalisation of Smallfoot in HOL
In this paper a general framework for separation logic inside the HOL theorem prover is presented. This framework is based on Abeparation Logic. It contains a model of an abstract,...
Thomas Tuerk
BMCBI
2008
152views more  BMCBI 2008»
13 years 7 months ago
JCoast - A biologist-centric software tool for data mining and comparison of prokaryotic (meta)genomes
Background: Current sequencing technologies give access to sequence information for genomes and metagenomes at a tremendous speed. Subsequent data processing is mainly performed b...
Michael Richter, Thierry Lombardot, Ivaylo Kostadi...