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BMCBI
2007
102views more  BMCBI 2007»
13 years 7 months ago
FlexOracle: predicting flexible hinges by identification of stable domains
Background: Protein motions play an essential role in catalysis and protein-ligand interactions, but are difficult to observe directly. A substantial fraction of protein motions i...
Samuel Flores, Mark Gerstein
DAC
2004
ACM
14 years 8 months ago
Automated energy/performance macromodeling of embedded software
Efficient energy and performance estimation of embedded software is a critical part of any system-level design flow. Macromodeling based estimation is an attempt to speed up estim...
Anish Muttreja, Anand Raghunathan, Srivaths Ravi, ...
CAV
2008
Springer
139views Hardware» more  CAV 2008»
13 years 9 months ago
CSIsat: Interpolation for LA+EUF
We present CSIsat, an interpolating decision procedure for the quantifier-free theory of rational linear arithmetic and equality with uninterpreted function symbols. Our implementa...
Dirk Beyer, Damien Zufferey, Rupak Majumdar
BMCBI
2010
153views more  BMCBI 2010»
13 years 7 months ago
MimoSA: a system for minimotif annotation
Background: Minimotifs are short peptide sequences within one protein, which are recognized by other proteins or molecules. While there are now several minimotif databases, they a...
Jay Vyas, Ronald J. Nowling, Thomas Meusburger, Da...
ALMOB
2006
155views more  ALMOB 2006»
13 years 7 months ago
A phylogenetic generalized hidden Markov model for predicting alternatively spliced exons
Background: An important challenge in eukaryotic gene prediction is accurate identification of alternatively spliced exons. Functional transcripts can go undetected in gene expres...
Jonathan E. Allen, Steven L. Salzberg