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» Gene Sequence Alignment on a Public Computing Platform
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SC
2003
ACM
14 years 1 months ago
A Million-Fold Speed Improvement in Genomic Repeats Detection
This paper presents a novel, parallel algorithm for generating top alignments. Top alignments are used for finding internal repeats in biological sequences like proteins and gene...
John W. Romein, Jaap Heringa, Henri E. Bal
BIOINFORMATICS
2012
11 years 10 months ago
SSuMMo: rapid analysis, comparison and visualization of microbial communities
Motivation: Next-generation sequencing methods are generating increasingly massive datasets, yet still do not fully capture genetic diversity in the richest environments. To under...
Alex L. B. Leach, James P. J. Chong, Kelly R. Rede...
CSB
2005
IEEE
161views Bioinformatics» more  CSB 2005»
14 years 1 months ago
Data Integration in the Mouse Genome Informatics (MGI) Database
The Mouse Genome Informatics (MGI) Database at The Jackson Laboratory provides a comprehensive public resource about the laboratory mouse. MGI curated data types include gene repr...
Donnie Qi, Judith A. Blake, James A. Kadin, Joel E...
NAR
2011
290views Computer Vision» more  NAR 2011»
12 years 10 months ago
AHD2.0: an update version of Arabidopsis Hormone Database for plant systematic studies
Phytohormone studies enlightened our knowledge of plant responses to various changes. To provide a systematic and comprehensive view of genes participating in plant hormonal regul...
Zhiqiang Jiang, Xiao-Chuan Liu, Zhiyu Peng, Yinan ...
BMCBI
2007
116views more  BMCBI 2007»
13 years 7 months ago
Cloning, analysis and functional annotation of expressed sequence tags from the Earthworm Eisenia fetida
Background: Eisenia fetida, commonly known as red wiggler or compost worm, belongs to the Lumbricidae family of the Annelida phylum. Little is known about its genome sequence alth...
Mehdi Pirooznia, Ping Gong, Xin Guan, Laura S. Ino...