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» Gene networks inference using dynamic Bayesian networks
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BMCBI
2006
131views more  BMCBI 2006»
15 years 4 months ago
Hybridization interactions between probesets in short oligo microarrays lead to spurious correlations
Background: Microarrays measure the binding of nucleotide sequences to a set of sequence specific probes. This information is combined with annotation specifying the relationship ...
Michal J. Okoniewski, Crispin J. Miller
154
Voted
IJUFKS
2000
111views more  IJUFKS 2000»
15 years 4 months ago
A Factorized Representation of Independence of Causal Influence and Lazy Propagation
Theefficiency of algorithmsfor probabilistic inference in Bayesian networks can be improvedby exploiting independenceof causal influence. Thefactorized representation of independe...
Anders L. Madsen, Bruce D'Ambrosio
201
Voted
RECOMB
2004
Springer
16 years 4 months ago
Modeling and Analysis of Heterogeneous Regulation in Biological Networks
Abstract. In this study we propose a novel model for the representation of biological networks and provide algorithms for learning model parameters from experimental data. Our appr...
Irit Gat-Viks, Amos Tanay, Ron Shamir
BMCBI
2004
135views more  BMCBI 2004»
15 years 4 months ago
Information assessment on predicting protein-protein interactions
Background: Identifying protein-protein interactions is fundamental for understanding the molecular machinery of the cell. Proteome-wide studies of protein-protein interactions ar...
Nan Lin, Baolin Wu, Ronald Jansen, Mark Gerstein, ...
EDBT
2009
ACM
241views Database» more  EDBT 2009»
15 years 11 months ago
GADDI: distance index based subgraph matching in biological networks
Currently, a huge amount of biological data can be naturally represented by graphs, e.g., protein interaction networks, gene regulatory networks, etc. The need for indexing large ...
Shijie Zhang, Shirong Li, Jiong Yang