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» Gene networks inference using dynamic Bayesian networks
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BMCBI
2007
144views more  BMCBI 2007»
15 years 4 months ago
Accelerated search for biomolecular network models to interpret high-throughput experimental data
Background: The functions of human cells are carried out by biomolecular networks, which include proteins, genes, and regulatory sites within DNA that encode and control protein e...
Suman Datta, Bahrad A. Sokhansanj
UAI
2001
15 years 6 months ago
Expectation Propagation for approximate Bayesian inference
This paper presents a new deterministic approximation technique in Bayesian networks. This method, "Expectation Propagation," unifies two previous techniques: assumed-de...
Thomas P. Minka
170
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BMCBI
2008
129views more  BMCBI 2008»
15 years 4 months ago
Motif-directed network component analysis for regulatory network inference
Background: Network Component Analysis (NCA) has shown its effectiveness in discovering regulators and inferring transcription factor activities (TFAs) when both microarray data a...
Chen Wang, Jianhua Xuan, Li Chen, Po Zhao, Yue Wan...
BIBM
2008
IEEE
107views Bioinformatics» more  BIBM 2008»
15 years 11 months ago
A Functional Network of Yeast Genes Using Gene Ontology Information
In the post-genomic era, the organization of genes into networks has played an important role in characterizing the functions of individual genes and the interplay between them. I...
Erliang Zeng, Giri Narasimhan, Lisa Schneper, Kala...
CCE
2005
15 years 4 months ago
Large-scale inference of the transcriptional regulation of Bacillus subtilis
This paper addresses the inference of the transcriptional regulatory network of Bacillus subtilis. Two inference approaches, a linear, additive model and a non-linear power-law mo...
Anshuman Gupta, Jeffrey D. Varner, Costas D. Maran...