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» Generalized Composite Motif Discovery
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BMCBI
2007
125views more  BMCBI 2007»
13 years 7 months ago
Statistical tests to compare motif count exceptionalities
Background: Finding over- or under-represented motifs in biological sequences is now a common task in genomics. Thanks to p-value calculation for motif counts, exceptional motifs ...
Stéphane Robin, Sophie Schbath, Vincent Van...
GECCO
2006
Springer
159views Optimization» more  GECCO 2006»
13 years 11 months ago
Identification of weak motifs in multiple biological sequences using genetic algorithm
Recognition of motifs in multiple unaligned sequences provides an insight into protein structure and function. The task of discovering these motifs is very challenging because mos...
Topon Kumar Paul, Hitoshi Iba
NN
2006
Springer
13 years 7 months ago
Self-organizing neural networks to support the discovery of DNA-binding motifs
Identification of the short DNA sequence motifs that serve as binding targets for transcription factors is an important challenge in bioinformatics. Unsupervised techniques from t...
Shaun Mahony, Panayiotis V. Benos, Terry J. Smith,...
KDD
2010
ACM
199views Data Mining» more  KDD 2010»
13 years 11 months ago
Online discovery and maintenance of time series motifs
The detection of repeated subsequences, time series motifs, is a problem which has been shown to have great utility for several higher-level data mining algorithms, including clas...
Abdullah Mueen, Eamonn J. Keogh
TCS
2008
13 years 7 months ago
Detection of subtle variations as consensus motifs
We address the problem of detecting consensus motifs, that occur with subtle variations, across multiple sequences. These are usually functional domains in DNA sequences such as t...
Matteo Comin, Laxmi Parida