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RECOMB
2002
Springer
14 years 11 months ago
Handling long targets and errors in sequencing by hybridization
Eran Halperin, Shay Halperin, Tzvika Hartman, Ron ...
CANDC
2006
ACM
13 years 11 months ago
Dealing with repetitions in sequencing by hybridization
DNA sequencing by hybridization (SBH) induces errors in the biochemical experiment. Some of them are random and disappear when the experiment is repeated. Others are systematic, i...
Jacek Blazewicz, Fred Glover, Marta Kasprzak, Wojc...
BMCBI
2007
106views more  BMCBI 2007»
13 years 11 months ago
Simultaneous identification of long similar substrings in large sets of sequences
Background: Sequence comparison faces new challenges today, with many complete genomes and large libraries of transcripts known. Gene annotation pipelines match these sequences in...
Jürgen Kleffe, Friedrich Möller, Burghar...
ASPDAC
2006
ACM
100views Hardware» more  ASPDAC 2006»
14 years 5 months ago
Generation of shorter sequences for high resolution error diagnosis using sequential SAT
Commonly used pattern sources in simulation-based verification include random, guided random, or design verification patterns. Although these patterns may help bring the design ...
Sung-Jui (Song-Ra) Pan, Kwang-Ting Cheng, John Moo...
BMCBI
2006
100views more  BMCBI 2006»
13 years 11 months ago
DNPTrapper: an assembly editing tool for finishing and analysis of complex repeat regions
Background: Many genome projects are left unfinished due to complex, repeated regions. Finishing is the most time consuming step in sequencing and current finishing tools are not ...
Erik Arner, Martti T. Tammi, Anh-Nhi Tran, Ellen K...