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» HomPPI: A Class of Sequence Homology Based Protein-Protein I...
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BMCBI
2006
202views more  BMCBI 2006»
13 years 7 months ago
DWARF - a data warehouse system for analyzing protein families
Background: The emerging field of integrative bioinformatics provides the tools to organize and systematically analyze vast amounts of highly diverse biological data and thus allo...
Markus Fischer, Quan K. Thai, Melanie Grieb, J&uum...
CANDC
2006
ACM
13 years 7 months ago
A comment on "Prediction of protein structural classes by a new measure of information discrepancy"
Protein structural class describes the overall folding type of a protein or its domain. A number of methods were developed to predict protein structural class based on its primary...
Kanaka Durga Kedarisetti, Lukasz A. Kurgan, Scott ...
BMCBI
2008
164views more  BMCBI 2008»
13 years 7 months ago
Word correlation matrices for protein sequence analysis and remote homology detection
Background: Classification of protein sequences is a central problem in computational biology. Currently, among computational methods discriminative kernel-based approaches provid...
Thomas Lingner, Peter Meinicke
SDM
2010
SIAM
192views Data Mining» more  SDM 2010»
13 years 9 months ago
Fast and Accurate Gene Prediction by Decision Tree Classification
Gene prediction is one of the most challenging tasks in genome analysis, for which many tools have been developed and are still evolving. In this paper, we present a novel gene pr...
Rong She, Jeffrey Shih-Chieh Chu, Ke Wang, Nanshen...
BMCBI
2007
132views more  BMCBI 2007»
13 years 7 months ago
TPRpred: a tool for prediction of TPR-, PPR- and SEL1-like repeats from protein sequences
Background: Solenoid repeat proteins of the Tetratrico Peptide Repeat (TPR) family are involved as scaffolds in a broad range of protein-protein interactions. Several resources ar...
Manjunatha R. Karpenahalli, Andrei N. Lupas, Johan...