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BMCBI
2010
130views more  BMCBI 2010»
13 years 11 months ago
Analysis of DNA strand-specific differential expression with high density tiling microarrays
Background: DNA microarray technology allows the analysis of genome structure and dynamics at genome-wide scale. Expression microarrays (EMA) contain probes for annotated open rea...
Luis Quintales, Mar Sánchez, Francisco Ante...
ISMB
2004
14 years 16 days ago
Exploiting conserved structure for faster annotation of non-coding RNAs without loss of accuracy
Motivation: Non-coding RNAs (ncRNAs)--functional RNA molecules not coding for proteins--are grouped into hundreds of families of homologs. To find new members of an ncRNA gene fam...
Zasha Weinberg, Walter L. Ruzzo
CHI
2006
ACM
14 years 11 months ago
Co-authoring with structured annotations
Most co-authoring tools support basic annotations, such as edits and comments that are anchored at specific locations in the document. However, they do not support metacommentary ...
Qixing Zheng, Kellogg S. Booth, Joanna McGrenere
BMCBI
2005
86views more  BMCBI 2005»
13 years 11 months ago
Confirmation of human protein interaction data by human expression data
Background: With microarray technology the expression of thousands of genes can be measured simultaneously. It is well known that the expression levels of genes of interacting pro...
Andreas Hahn, Jörg Rahnenführer, Priti T...
BMCBI
2007
135views more  BMCBI 2007»
13 years 11 months ago
Automatic extraction of reliable regions from multiple sequence alignments
Background: High quality multiple alignments are crucial in the transfer of annotation from one genome to another. Multiple alignment methods strive to achieve ever increasing lev...
Timo Lassmann, Erik L. L. Sonnhammer