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CANDC
2006
ACM
13 years 8 months ago
Dealing with repetitions in sequencing by hybridization
DNA sequencing by hybridization (SBH) induces errors in the biochemical experiment. Some of them are random and disappear when the experiment is repeated. Others are systematic, i...
Jacek Blazewicz, Fred Glover, Marta Kasprzak, Wojc...
CPM
1999
Springer
99views Combinatorics» more  CPM 1999»
14 years 1 months ago
On the Complexity of Positional Sequencing by Hybridization
In sequencing by hybridization (SBH), one has to reconstruct a sequence from its l-long substrings. SBH was proposed as an alternative to gel-based DNA sequencing approaches, but ...
Amir Ben-Dor, Itsik Pe'er, Ron Shamir, Roded Shara...
EMNLP
2006
13 years 10 months ago
A Hybrid Markov/Semi-Markov Conditional Random Field for Sequence Segmentation
Markov order-1 conditional random fields (CRFs) and semi-Markov CRFs are two popular models for sequence segmentation and labeling. Both models have advantages in terms of the typ...
Galen Andrew
CPAIOR
2010
Springer
14 years 2 days ago
Hybrid Methods for the Multileaf Collimator Sequencing Problem
Abstract. The multileaf collimator sequencing problem is an important component of the effective delivery of intensity modulated radiotherapy used in the treatment of cancer. The p...
Hadrien Cambazard, Eoin O'Mahony, Barry O'Sullivan
GECCO
2004
Springer
105views Optimization» more  GECCO 2004»
14 years 2 months ago
An Enhanced Genetic Algorithm for DNA Sequencing by Hybridization with Positive and Negative Errors
Abstract. This paper describes a genetic algorithm for the DNA sequencing problem. The algorithm allows the input spectrum to contain both positive and negative errors as could be ...
Thang Nguyen Bui, Waleed A. Youssef