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    » Identifying Projected Clusters from Gene Expression Profiles
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    BMCBI
    2011
    287views Artificial Intelligence» more  BMCBI 2011»
    RedundancyMiner: De-replication of redundant GO categories in microarray and proteomics analysis
    13 years 2 months ago
    RedundancyMiner: De-replication of redundant GO categories in microarray and proteomics analysis
    Download  www.biomedcentral.com
    Background: The Gene Ontology (GO) Consortium organizes genes into hierarchical categories based on biological process, molecular function and subcellular localization. Tools such...
    Barry Zeeberg, Hongfang Liu, Ari B. Kahn, Martin E...
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    BMCBI
    2005
    94views more  BMCBI 2005»
    Measuring similarities between transcription factor binding sites
    13 years 7 months ago
    Measuring similarities between transcription factor binding sites
    Download  www.ulb.ac.be
    Background: Collections of transcription factor binding profiles (Transfac, Jaspar) are essential to identify regulatory elements in DNA sequences. Subsets of highly similar profi...
    Szymon M. Kielbasa, Didier Gonze, Hanspeter Herzel
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    BMCBI
    2008
    118views more  BMCBI 2008»
    PseudoGeneQuest - Service for identification of different pseudogene types in the human genome
    13 years 7 months ago
    PseudoGeneQuest - Service for identification of different pseudogene types in the human genome
    Download  www.biomedcentral.com
    Background: Pseudogenes, nonfunctional copies of genes, evolve fast due the lack of evolutionary pressures and thus appear in several different forms. PseudoGeneQuest is an online...
    Csaba P. Ortutay, Mauno Vihinen
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    NAR
    2011
    208views Computer Vision» more  NAR 2011»
    Tomato Functional Genomics Database: a comprehensive resource and analysis package for tomato functional genomics
    12 years 10 months ago
    Tomato Functional Genomics Database: a comprehensive resource and analysis package for tomato functional genomics
    Download  nar.oxfordjournals.org
    Tomato Functional Genomics Database (TFGD) provides a comprehensive resource to store, query, mine, analyze, visualize and integrate large-scale tomato functional genomics data se...
    Zhangjun Fei, Je-Gun Joung, Xuemei Tang, Yi Zheng,...
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    BMCBI
    2007
    136views more  BMCBI 2007»
    Prediction of tissue-specific cis-regulatory modules using Bayesian networks and regression trees
    13 years 7 months ago
    Prediction of tissue-specific cis-regulatory modules using Bayesian networks and regression trees
    Download  www.biomedcentral.com
    Background: In vertebrates, a large part of gene transcriptional regulation is operated by cisregulatory modules. These modules are believed to be regulating much of the tissue-sp...
    Xiaoyu Chen, Mathieu Blanchette
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