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IPPS
2007
IEEE
14 years 1 months ago
Analysis of a Computational Biology Simulation Technique on Emerging Processing Architectures
1 Multi-paradigm, multi-threaded and multi-core computing devices available today provide several orders of magnitude performance improvement over mainstream microprocessors. These...
Jeremy S. Meredith, Sadaf R. Alam, Jeffrey S. Vett...
RECOMB
2004
Springer
14 years 8 months ago
Designing multiple simultaneous seeds for DNA similarity search
The challenge of similarity search in massive DNA sequence databases has inspired major changes in BLAST-style alignment tools, which accelerate search by inspecting only pairs of...
Yanni Sun, Jeremy Buhler
IPPS
2003
IEEE
14 years 26 days ago
Flexible CoScheduling: Mitigating Load Imbalance and Improving Utilization of Heterogeneous Resources
Fine-grained parallel applications require all their processes to run simultaneously on distinct processors to achieve good efficiency. This is typically accomplished by space sl...
Eitan Frachtenberg, Dror G. Feitelson, Fabrizio Pe...
LCTRTS
2010
Springer
13 years 5 months ago
Improving both the performance benefits and speed of optimization phase sequence searches
The issues of compiler optimization phase ordering and selection present important challenges to compiler developers in several domains, and in particular to the speed, code size,...
Prasad A. Kulkarni, Michael R. Jantz, David B. Wha...
IEEEPACT
2005
IEEE
14 years 1 months ago
Dual-Core Execution: Building a Highly Scalable Single-Thread Instruction Window
Current integration trends embrace the prosperity of single-chip multi-core processors. Although multi-core processors deliver significantly improved system throughput, single-thr...
Huiyang Zhou