Background: To infer homology and subsequently gene function, the Smith-Waterman (SW) algorithm is used to find the optimal local alignment between two sequences. When searching s...
—Super-scalar, out-of-order processors that can have tens of read and write requests in the execution window place significant demands on Memory Level Parallelism (MLP). Multi- ...
George C. Caragea, Alexandros Tzannes, Fuat Keceli...
One of the more popular placement algorithms for Field Programmable Gate Arrays (FPGAs) is called Simulated Annealing (SA). This algorithm tries to create a good quality placement ...
Background: High-throughput mass spectrometry (MS) proteomics data is increasingly being used to complement traditional structural genome annotation methods. To keep pace with the...
William S. Sanders, Nan Wang, Susan M. Bridges, Br...
We propose a new memory model called short-term memory for managing objects on the heap. In contrast to the traditional persistent memory model for heap management, objects in sho...
Martin Aigner, Andreas Haas, Christoph M. Kirsch, ...