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» Improving Software Pipelining with Unroll-and-Jam
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BMCBI
2007
167views more  BMCBI 2007»
13 years 7 months ago
Applying negative rule mining to improve genome annotation
Background: Unsupervised annotation of proteins by software pipelines suffers from very high error rates. Spurious functional assignments are usually caused by unwarranted homolog...
Irena I. Artamonova, Goar Frishman, Dmitrij Frishm...
BMCBI
2007
147views more  BMCBI 2007»
13 years 7 months ago
Improved residue contact prediction using support vector machines and a large feature set
Background: Predicting protein residue-residue contacts is an important 2D prediction task. It is useful for ab initio structure prediction and understanding protein folding. In s...
Jianlin Cheng, Pierre Baldi
CGO
2003
IEEE
14 years 23 days ago
Optimizing Memory Accesses For Spatial Computation
In this paper we present the internal representation and optimizations used by the CASH compiler for improving the memory parallelism of pointer-based programs. CASH uses an SSA-b...
Mihai Budiu, Seth Copen Goldstein
VISUALIZATION
2000
IEEE
13 years 12 months ago
FastSplats: optimized splatting on rectilinear grids
Splatting is widely applied in many areas, including volume, point-based, and image-based rendering. Improvements to splatting, such as eliminating popping and color bleeding, occ...
Jian Huang, Roger Crawfis, Naeem Shareef, Klaus Mu...
ISLPED
1997
ACM
108views Hardware» more  ISLPED 1997»
13 years 11 months ago
Techniques for low energy software
The energy consumption of a system depends upon the hardware and software component of a system. Since it is the software which drives the hardware in most systems, decisions take...
Huzefa Mehta, Robert Michael Owens, Mary Jane Irwi...