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NAR
2011
158views Computer Vision» more  NAR 2011»
12 years 10 months ago
T1DBase: update 2011, organization and presentation of large-scale data sets for type 1 diabetes research
T1DBase (http://www.t1dbase.org) is web platform, which supports the type 1 diabetes (T1D) community. It integrates genetic, genomic and expression data relevant to T1D research a...
Oliver S. Burren, Ellen C. Adlem, Premanand Achuth...
BMCBI
2008
115views more  BMCBI 2008»
13 years 8 months ago
Genome-scale cluster analysis of replicated microarrays using shrinkage correlation coefficient
Background: Currently, clustering with some form of correlation coefficient as the gene similarity metric has become a popular method for profiling genomic data. The Pearson corre...
Jianchao Yao, Chunqi Chang, Mari L. Salmi, Yeung S...
BMCBI
2002
89views more  BMCBI 2002»
13 years 7 months ago
Sources of variability and effect of experimental approach on expression profiling data interpretation
Background: We provide a systematic study of the sources of variability in expression profiling data using 56 RNAs isolated from human muscle biopsies (34 Affymetrix MuscleChip ar...
Marina Bakay, Yi-Wen Chen, Rehannah H. A. Borup, P...
BMCBI
2008
204views more  BMCBI 2008»
13 years 8 months ago
EST2uni: an open, parallel tool for automated EST analysis and database creation, with a data mining web interface and microarra
Background: Expressed sequence tag (EST) collections are composed of a high number of single-pass, redundant, partial sequences, which need to be processed, clustered, and annotat...
Javier Forment, Francisco Gilabert Villamón...
ICDM
2008
IEEE
193views Data Mining» more  ICDM 2008»
14 years 2 months ago
Multiplicative Mixture Models for Overlapping Clustering
The problem of overlapping clustering, where a point is allowed to belong to multiple clusters, is becoming increasingly important in a variety of applications. In this paper, we ...
Qiang Fu, Arindam Banerjee