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» Indexing and Retrieval for Genomic Databases
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CIKM
2009
Springer
15 years 11 months ago
Compact full-text indexing of versioned document collections
We study the problem of creating highly compressed fulltext index structures for versioned document collections, that is, collections that contain multiple versions of each docume...
Jinru He, Hao Yan, Torsten Suel
BMCBI
2005
148views more  BMCBI 2005»
15 years 4 months ago
NemaFootPrinter: a web based software for the identification of conserved non-coding genome sequence regions between C. elegans
Background: NemaFootPrinter (Nematode Transcription Factor Scan Through Philogenetic Footprinting) is a web-based software for interactive identification of conserved, non-exonic ...
Davide Rambaldi, Alessandro Guffanti, Paolo Morand...
NAR
2000
127views more  NAR 2000»
15 years 4 months ago
The EMBL Nucleotide Sequence Database
The European Molecular Biology Laboratory (EMBL) Nucleotide Sequence Database (http://www.ebi.ac. uk/embl/index.html ) is maintained at the European Bioinformatics Institute (EBI)...
Wendy Baker, Alexandra van den Broek, Evelyn Camon...
NAR
2011
197views Computer Vision» more  NAR 2011»
14 years 7 months ago
AmoebaDB and MicrosporidiaDB: functional genomic resources for Amoebozoa and Microsporidia species
AmoebaDB (http://AmoebaDB.org) and MicrosporidiaDB (http://MicrosporidiaDB.org) are new functional genomic databases serving the amoebozoa and microsporidia research communities, ...
Cristina Aurrecoechea, Ana Barreto, John Brestelli...
BMCBI
2004
154views more  BMCBI 2004»
15 years 4 months ago
Base-By-Base: Single nucleotide-level analysis of whole viral genome alignments
Background: With ever increasing numbers of closely related virus genomes being sequenced, it has become desirable to be able to compare two genomes at a level more detailed than ...
Ryan Brodie, Alex J. Smith, Rachel L. Roper, Vasil...