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» Inferring Hidden Causal Structure
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ECCB
2008
IEEE
15 years 9 months ago
Connect the dots: exposing hidden protein family connections from the entire sequence tree
Motivation: Mapping of remote evolutionary links is a classic computational problem of much interest. Relating protein families allows for functional and structural inference on u...
Yaniv Loewenstein, Michal Linial
NIPS
1996
15 years 4 months ago
Continuous Sigmoidal Belief Networks Trained using Slice Sampling
Real-valued random hidden variables can be useful for modelling latent structure that explains correlations among observed variables. I propose a simple unit that adds zero-mean G...
Brendan J. Frey
FSTTCS
1998
Springer
15 years 7 months ago
A Synchronous Semantics of Higher-Order Processes for Modeling Reconfigurable Reactive Systems
Abstract. Synchronous languages are well suited for the design of dependable real-time systems: they enable a very high-level specification and an extremely modular implementation ...
Jean-Pierre Talpin, David Nowak
WABI
2007
Springer
110views Bioinformatics» more  WABI 2007»
15 years 9 months ago
Haplotype Inference Via Hierarchical Genotype Parsing
The within-species genetic variation due to recombinations leads to a mosaic-like structure of DNA. This structure can be modeled, e.g. by parsing sample sequences of current DNA w...
Pasi Rastas, Esko Ukkonen
BMCBI
2004
177views more  BMCBI 2004»
15 years 2 months ago
Gapped alignment of protein sequence motifs through Monte Carlo optimization of a hidden Markov model
Background: Certain protein families are highly conserved across distantly related organisms and belong to large and functionally diverse superfamilies. The patterns of conservati...
Andrew F. Neuwald, Jun S. Liu