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» Inferring differentiation pathways from gene expression
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BMCBI
2006
203views more  BMCBI 2006»
13 years 8 months ago
Genome-wide prediction of transcriptional regulatory elements of human promoters using gene expression and promoter analysis dat
Background: A complete understanding of the regulatory mechanisms of gene expression is the next important issue of genomics. Many bioinformaticians have developed methods and alg...
Seon-Young Kim, YongSung Kim
BMCBI
2010
155views more  BMCBI 2010»
13 years 9 months ago
A bi-ordering approach to linking gene expression with clinical annotations in gastric cancer
Background: In the study of cancer genomics, gene expression microarrays, which measure thousands of genes in a single assay, provide abundant information for the investigation of...
Fan Shi, Christopher Leckie, Geoff MacIntyre, Izha...
BMCBI
2007
103views more  BMCBI 2007»
13 years 8 months ago
Systems biology approach for mapping the response of human urothelial cells to infection by Enterococcus faecalis
Background: To better understand the response of urinary epithelial (urothelial) cells to Enterococcus faecalis, a uropathogen that exhibits resistance to multiple antibiotics, a ...
Mikhail G. Dozmorov, Kimberly D. Kyker, Ricardo Sa...
BMCBI
2006
112views more  BMCBI 2006»
13 years 8 months ago
A phylogenomic gene cluster resource: the Phylogenetically Inferred Groups (PhIGs) database
Background: We present here the PhIGs database, a phylogenomic resource for sequenced genomes. Although many methods exist for clustering gene families, very few attempt to create...
Paramvir S. Dehal, Jeffrey L. Boore
METMBS
2003
165views Mathematics» more  METMBS 2003»
13 years 10 months ago
GeneBox: Interactive Visualization of Microarray Data Sets
Abstract Technological advancements are constantly increasing the size and complexity of data resulting from microarray experiments. This fact has led biologists to ask complex que...
Nameeta Shah, Vladimir Filkov, Bernd Hamann, Kenne...