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» Information Analysis of DNA Sequences
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163
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BMCBI
2007
94views more  BMCBI 2007»
15 years 6 months ago
A Hidden Markov Model to estimate population mixture and allelic copy-numbers in cancers using Affymetrix SNP arrays
Background: Affymetrix SNP arrays can interrogate thousands of SNPs at the same time. This allows us to look at the genomic content of cancer cells and to investigate the underlyi...
Philippe Lamy, Claus L. Andersen, Lars Dyrskjot, N...
BMCBI
2010
100views more  BMCBI 2010»
15 years 6 months ago
Using genomic signatures for HIV-1 sub-typing
Background: Human Immunodeficiency Virus type 1 (HIV-1), the causative agent of Acquired Immune Deficiency Syndrome (AIDS), exhibits very high genetic diversity with different var...
Aridaman Pandit, Somdatta Sinha
199
Voted
SDM
2003
SIAM
174views Data Mining» more  SDM 2003»
15 years 7 months ago
STAMP: On Discovery of Statistically Important Pattern Repeats in Long Sequential Data
In this paper, we focus on mining periodic patterns allowing some degree of imperfection in the form of random replacement from a perfect periodic pattern. In InfoMiner+, we propo...
Jiong Yang, Wei Wang 0010, Philip S. Yu
IMSCCS
2006
IEEE
16 years 5 days ago
Combining Comparative Genomics with de novo Motif Discovery to Identify Human Transcription Factor DNA-Binding Motifs
Background: As more and more genomes are sequenced, comparative genomics approaches provide a methodology for identifying conserved regulatory elements that may be involved in gen...
Linyong Mao, W. Jim Zheng
NAR
2000
152views more  NAR 2000»
15 years 5 months ago
ASDB: database of alternatively spliced genes
Version 2.1 of ASDB (Alternative Splicing Data Base) contains 1922 protein and 2486 DNA sequences. The protein entries from SWISS-PROT are joined into clusters corresponding to al...
I. Dralyuk, Michael Brudno, Mikhail S. Gelfand, Ma...