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» Integrated search and alignment of protein structures
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LREC
2010
184views Education» more  LREC 2010»
13 years 9 months ago
New Features in Spoken Language Search Hawk (SpLaSH): Query Language and Query Sequence
In this work we present further development of the SpLaSH (Spoken Language Search Hawk) project. SpLaSH implements a data model for annotated speech corpora integrated with textua...
Sara Romano, Francesco Cutugno
NAR
2011
162views Computer Vision» more  NAR 2011»
12 years 10 months ago
GlycomeDB - a unified database for carbohydrate structures
GlycomeDB integrates the structural and taxonomic data of all major public carbohydrate databases, as well as carbohydrates contained in the Protein Data Bank, which renders the d...
René Ranzinger, Stephan Herget, Claus-Wilhe...
IPPS
2005
IEEE
14 years 1 months ago
FROST: Revisited and Distributed
FROST (Fold Recognition-Oriented Search Tool) [6] is a software whose purpose is to assign a 3D structure to a protein sequence. It is based on a series of filters and uses a dat...
Vincent Poirriez, Rumen Andonov, Antoine Marin, Je...
NAR
2008
103views more  NAR 2008»
13 years 7 months ago
STITCH: interaction networks of chemicals and proteins
The knowledge about interactions between proteins and small molecules is essential for the understanding of molecular and cellular functions. However, information on such interact...
Michael Kuhn 0004, Christian von Mering, Monica Ca...
BMCBI
2007
112views more  BMCBI 2007»
13 years 7 months ago
PFAAT version 2.0: A tool for editing, annotating, and analyzing multiple sequence alignments
Background: By virtue of their shared ancestry, homologous sequences are similar in their structure and function. Consequently, multiple sequence alignments are routinely used to ...
Daniel R. Caffrey, Paul H. Dana, Vidhya Mathur, Ma...