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CONCUR
2007
Springer
14 years 1 months ago
Rule-Based Modelling of Cellular Signalling
Abstract. Modelling is becoming a necessity in studying biological signalling pathways, because the combinatorial complexity of such systems rapidly overwhelms intuitive and qualit...
Vincent Danos, Jérôme Feret, Walter F...
VRML
2004
ACM
14 years 25 days ago
PathSim visualizer: an Information-Rich Virtual Environment framework for systems biology
Increasingly, biology researchers and medical practitioners are using computational tools to model and analyze dynamic systems across scales from the macro to the cellular to the ...
Nicholas F. Polys, Doug A. Bowman, Chris North, Re...
ICLP
2010
Springer
13 years 11 months ago
A Logical Paradigm for Systems Biology (Invited Talk)
[6]. An SBML model can be interpreted in Biocham at three abstraction levels: • the Boolean semantics (asynchronuous Boolean state transitions on the presence/absence of molecule...
François Fages
BMCBI
2007
182views more  BMCBI 2007»
13 years 7 months ago
Hybrid elementary flux analysis/nonparametric modeling: application for bioprocess control
Background: The progress in the "-omic" sciences has allowed a deeper knowledge on many biological systems with industrial interest. This knowledge is still rarely used ...
Ana P. Teixeira, Carlos Alves, Paula M. Alves, Man...
BMCBI
2006
141views more  BMCBI 2006»
13 years 7 months ago
Visual setup of logical models of signaling and regulatory networks with ProMoT
Background: The analysis of biochemical networks using a logical (Boolean) description is an important approach in Systems Biology. Recently, new methods have been proposed to ana...
Julio Saez-Rodriguez, Sebastian Mirschel, Rebecca ...