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BIBE
2007
IEEE
128views Bioinformatics» more  BIBE 2007»
14 years 2 months ago
QOMA2: Optimizing the alignment of many sequences
Abstract—We consider the problem of aligning multiple protein sequences with the goal of maximizing the SP (Sum-of-Pairs) score, when the number of sequences is large. The QOMA (...
Xu Zhang, Tamer Kahveci
GLVLSI
2007
IEEE
211views VLSI» more  GLVLSI 2007»
14 years 2 months ago
Multi-processor operating system emulation framework with thermal feedback for systems-on-chip
Multi-Processor System-On-Chip (MPSoC) can provide the performance levels required by high-end embedded applications. However, they do so at the price of an increasing power densi...
Salvatore Carta, Andrea Acquaviva, Pablo Garcia De...
IEEEPACT
2007
IEEE
14 years 2 months ago
The OpenTM Transactional Application Programming Interface
Transactional Memory (TM) simplifies parallel programming by supporting atomic and isolated execution of user-identified tasks. To date, TM programming has required the use of l...
Woongki Baek, Chi Cao Minh, Martin Trautmann, Chri...
IPPS
2007
IEEE
14 years 2 months ago
Optimizing the Fast Fourier Transform on a Multi-core Architecture
The rapid revolution in microprocessor chip architecture due to multicore technology is presenting unprecedented challenges to the application developers as well as system softwar...
Long Chen, Ziang Hu, Junmin Lin, Guang R. Gao
MICRO
2007
IEEE
133views Hardware» more  MICRO 2007»
14 years 2 months ago
Revisiting the Sequential Programming Model for Multi-Core
Single-threaded programming is already considered a complicated task. The move to multi-threaded programming only increases the complexity and cost involved in software developmen...
Matthew J. Bridges, Neil Vachharajani, Yun Zhang, ...
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