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BMCBI
2008
118views more  BMCBI 2008»
13 years 7 months ago
Evaluation of phylogenetic footprint discovery for predicting bacterial cis-regulatory elements and revealing their evolution
Background: The detection of conserved motifs in promoters of orthologous genes (phylogenetic footprints) has become a common strategy to predict cis-acting regulatory elements. S...
Rekin's Janky, Jacques van Helden
BMCBI
2007
113views more  BMCBI 2007»
13 years 7 months ago
Statistical power of phylo-HMM for evolutionarily conserved element detection
Background: An important goal of comparative genomics is the identification of functional elements through conservation analysis. Phylo-HMM was recently introduced to detect conse...
Xiaodan Fan, Jun Zhu, Eric E. Schadt, Jun S. Liu
SEKE
2005
Springer
14 years 1 months ago
Using Feature-Oriented Analysis to Recover Legacy Software Design for Software Evolution
Most design recovery approaches start from analysing source code. Nonetheless, it is very difficult to get adequate design information only depending on source code. Additional av...
Shaoyun Li, Feng Chen, Zhihong Liang, Hongji Yang
BMCBI
2007
226views more  BMCBI 2007»
13 years 7 months ago
MiRFinder: an improved approach and software implementation for genome-wide fast microRNA precursor scans
Background: MicroRNAs (miRNAs) are recognized as one of the most important families of noncoding RNAs that serve as important sequence-specific post-transcriptional regulators of ...
Ting-Hua Huang, Bin Fan, Max F. Rothschild, Zhi-Li...
CICLING
2010
Springer
14 years 2 months ago
Multi-view Bootstrapping for Relation Extraction by Exploring Web Features and Linguistic Features
Binary semantic relation extraction from Wikipedia is particularly useful for various NLP and Web applications. Currently frequent pattern miningbased methods and syntactic analysi...
Yulan Yan, Haibo Li, Yutaka Matsuo, Mitsuru Ishizu...