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» Maximum entropy methods for biological sequence modeling
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EMNLP
2004
15 years 5 months ago
Comparing and Combining Generative and Posterior Probability Models: Some Advances in Sentence Boundary Detection in Speech
We compare and contrast two different models for detecting sentence-like units in continuous speech. The first approach uses hidden Markov sequence models based on N-grams and max...
Yang Liu, Andreas Stolcke, Elizabeth Shriberg, Mar...
ISMB
1998
15 years 5 months ago
Sequence Assembly Validation by Multiple Restriction Digest Fragment Coverage Analysis
DNA sequence analysis depends on the accurate assembly of fragment reads for the determination of a consensus sequence. This report examines the possibility of analyzing multiple,...
Eric C. Rouchka, David J. States
RECOMB
2005
Springer
16 years 4 months ago
Learning Interpretable SVMs for Biological Sequence Classification
Background: Support Vector Machines (SVMs) ? using a variety of string kernels ? have been successfully applied to biological sequence classification problems. While SVMs achieve ...
Christin Schäfer, Gunnar Rätsch, Sö...
BMCBI
2004
113views more  BMCBI 2004»
15 years 4 months ago
Oligo kernels for datamining on biological sequences: a case study on prokaryotic translation initiation sites
Background: Kernel-based learning algorithms are among the most advanced machine learning methods and have been successfully applied to a variety of sequence classification tasks ...
Peter Meinicke, Maike Tech, Burkhard Morgenstern, ...
RECOMB
2004
Springer
16 years 4 months ago
Maximum likelihood resolution of multi-block genotypes
We present a new algorithm for the problems of genotype phasing and block partitioning. Our algorithm is based on a new stochastic model, and on the novel concept of probabilistic...
Gad Kimmel, Ron Shamir