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» Maximum entropy methods for biological sequence modeling
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COLING
2000
13 years 10 months ago
Word Order Acquisition from Corpora
In this paper we describe a method of acquiring word order fl'om corpora. Word order is defined as the order of modifiers, or the order of phrasal milts called 'bunsetsu...
Kiyotaka Uchimoto, Masaki Murata, Qing Ma, Satoshi...
BMCBI
2006
161views more  BMCBI 2006»
13 years 9 months ago
A method for rapid similarity analysis of RNA secondary structures
Background: Owing to the rapid expansion of RNA structure databases in recent years, efficient methods for structure comparison are in demand for function prediction and evolution...
Na Liu, Tianming Wang
GCB
2000
Springer
137views Biometrics» more  GCB 2000»
14 years 23 days ago
Detecting Sporadic Recombination in DNA Alignments with Hidden Markov Models
Conventional phylogenetic tree estimation methods assume that all sites in a DNA multiple alignment have the same evolutionary history. This assumption is violated in data sets fro...
Dirk Husmeier, Frank Wright
RECOMB
2003
Springer
14 years 9 months ago
Combining phylogenetic and hidden Markov models in biosequence analysis
A few models have appeared in recent years that consider not only the way substitutions occur through evolutionary history at each site of a genome, but also the way the process c...
Adam C. Siepel, David Haussler
RECOMB
2007
Springer
14 years 9 months ago
A Bayesian Model That Links Microarray mRNA Measurements to Mass Spectrometry Protein Measurements
Abstract. An important problem in biology is to understand correspondences between mRNA microarray levels and mass spectrometry peptide counts. Recently, a compendium of mRNA expre...
Anitha Kannan, Andrew Emili, Brendan J. Frey