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» Maximum entropy methods for biological sequence modeling
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BMCBI
2010
103views more  BMCBI 2010»
13 years 9 months ago
Prediction of GTP interacting residues, dipeptides and tripeptides in a protein from its evolutionary information
Background: Guanosine triphosphate (GTP)-binding proteins play an important role in regulation of G-protein. Thus prediction of GTP interacting residues in a protein is one of the...
Jagat S. Chauhan, Nitish K. Mishra, Gajendra P. S....
BMCBI
2007
105views more  BMCBI 2007»
13 years 9 months ago
VaxiJen: a server for prediction of protective antigens, tumour antigens and subunit vaccines
Background: Vaccine development in the post-genomic era often begins with the in silico screening of genome information, with the most probable protective antigens being predicted...
Irini A. Doytchinova, Darren R. Flower
ISMB
1993
13 years 10 months ago
Knowledge Discovery in GENBANK
Wedescribe various methods designed to discover knowledge in the GenBanknucleic acid sequence database. Using a grammatical model of gene structure, we create a parse tree of a ge...
Jeffery S. Aaronson, Juergen Haas, G. Christian Ov...
RECOMB
2008
Springer
14 years 9 months ago
Accurate Computation of Likelihoods in the Coalescent with Recombination Via Parsimony
Understanding the variation of recombination rates across a given genome is crucial for disease gene mapping and for detecting signatures of selection, to name just a couple of app...
Jotun Hein, Rune B. Lyngsø, Yun S. Song
BMCBI
2008
204views more  BMCBI 2008»
13 years 9 months ago
EST2uni: an open, parallel tool for automated EST analysis and database creation, with a data mining web interface and microarra
Background: Expressed sequence tag (EST) collections are composed of a high number of single-pass, redundant, partial sequences, which need to be processed, clustered, and annotat...
Javier Forment, Francisco Gilabert Villamón...