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BMCBI
2007
198views more  BMCBI 2007»
13 years 8 months ago
Correlation analysis reveals the emergence of coherence in the gene expression dynamics following system perturbation
Time course gene expression experiments are a popular means to infer co-expression. Many methods have been proposed to cluster genes or to build networks based on similarity measu...
Nicola Neretti, Daniel Remondini, Marc Tatar, John...
BMCBI
2011
13 years 7 days ago
FFCA: a feasibility-based method for flux coupling analysis of metabolic networks
Background: Flux coupling analysis (FCA) is a useful method for finding dependencies between fluxes of a metabolic network at steady-state. FCA classifies reactions into subsets (...
László Dávid, Sayed-Amir Mara...
BMCBI
2010
160views more  BMCBI 2010»
13 years 3 months ago
eHive: An Artificial Intelligence workflow system for genomic analysis
Background: The Ensembl project produces updates to its comparative genomics resources with each of its several releases per year. During each release cycle approximately two week...
Jessica Severin, Kathryn Beal, Albert J. Vilella, ...
APCCM
2009
13 years 9 months ago
Conceptional Modeling and Analysis of Spatio-Temporal Processes in Biomolecular Systems
In life science, deeper understanding of biomolecular systems is acquired by computational modeling and analysis. For the modeling of several kinds of reaction networks, e.g. sign...
Andreas Schäfer, Mathias John
CDC
2010
IEEE
144views Control Systems» more  CDC 2010»
13 years 3 months ago
Formal analysis of piecewise affine systems through formula-guided refinement
Abstract-- We present a computational framework for identifying a set of initial states from which all trajectories of a piecewise affine (PWA) system satisfy a Linear Temporal Log...
Boyan Yordanov, Jana Tumova, Calin Belta, Ivana Ce...