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BMCBI
2004
133views more  BMCBI 2004»
13 years 8 months ago
Evaluation of several lightweight stochastic context-free grammars for RNA secondary structure prediction
Background: RNA secondary structure prediction methods based on probabilistic modeling can be developed using stochastic context-free grammars (SCFGs). Such methods can readily co...
Robin D. Dowell, Sean R. Eddy
JMLR
2010
101views more  JMLR 2010»
13 years 3 months ago
Classification Using Geometric Level Sets
A variational level set method is developed for the supervised classification problem. Nonlinear classifier decision boundaries are obtained by minimizing an energy functional tha...
Kush R. Varshney, Alan S. Willsky
BIOCOMP
2006
13 years 10 months ago
An Approach to Selecting Putative RNA Motifs Using MDL Principle
The history of molecular biology is punctuated by a series of discoveries demonstrating the surprising breadth of biological roles of ribonucleic acid (RNA). An ensemble of evoluti...
Mohammad Anwar, Marcel Turcotte
CDC
2008
IEEE
145views Control Systems» more  CDC 2008»
13 years 8 months ago
Necessary and sufficient conditions for success of the nuclear norm heuristic for rank minimization
Minimizing the rank of a matrix subject to constraints is a challenging problem that arises in many applications in control theory, machine learning, and discrete geometry. This c...
Benjamin Recht, Weiyu Xu, Babak Hassibi
BMCBI
2007
102views more  BMCBI 2007»
13 years 8 months ago
FlexOracle: predicting flexible hinges by identification of stable domains
Background: Protein motions play an essential role in catalysis and protein-ligand interactions, but are difficult to observe directly. A substantial fraction of protein motions i...
Samuel Flores, Mark Gerstein