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» Minimum Spanning Tree Based Clustering Algorithms
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RECOMB
2006
Springer
14 years 7 months ago
A Parameterized Algorithm for Protein Structure Alignment
This paper proposes a parameterized algorithm for aligning two protein structures, in the case where one protein structure is represented by a contact map graph and the other by a ...
Jinbo Xu, Feng Jiao, Bonnie Berger
STOC
2010
ACM
295views Algorithms» more  STOC 2010»
14 years 11 days ago
Approximation Schemes for Steiner Forest on Planar Graphs and Graphs of Bounded Treewidth
We give the first polynomial-time approximation scheme (PTAS) for the Steiner forest problem on planar graphs and, more generally, on graphs of bounded genus. As a first step, w...
MohammadHossein Bateni, MohammadTaghi Hajiaghayi a...
EDBT
2009
ACM
138views Database» more  EDBT 2009»
14 years 2 months ago
FOGGER: an algorithm for graph generator discovery
To our best knowledge, all existing graph pattern mining algorithms can only mine either closed, maximal or the complete set of frequent subgraphs instead of graph generators whic...
Zhiping Zeng, Jianyong Wang, Jun Zhang, Lizhu Zhou
BMCBI
2007
156views more  BMCBI 2007»
13 years 7 months ago
Large-scale clustering of CAGE tag expression data
Background: Recent analyses have suggested that many genes possess multiple transcription start sites (TSSs) that are differentially utilized in different tissues and cell lines. ...
Kazuro Shimokawa, Yuko Okamura-Oho, Takio Kurita, ...
JMLR
2010
179views more  JMLR 2010»
13 years 2 months ago
PAC-Bayesian Analysis of Co-clustering and Beyond
We derive PAC-Bayesian generalization bounds for supervised and unsupervised learning models based on clustering, such as co-clustering, matrix tri-factorization, graphical models...
Yevgeny Seldin, Naftali Tishby