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BMCBI
2007
153views more  BMCBI 2007»
13 years 8 months ago
A new pairwise kernel for biological network inference with support vector machines
Background: Much recent work in bioinformatics has focused on the inference of various types of biological networks, representing gene regulation, metabolic processes, protein-pro...
Jean-Philippe Vert, Jian Qiu, William Stafford Nob...
JCB
2008
159views more  JCB 2008»
13 years 8 months ago
BayesMD: Flexible Biological Modeling for Motif Discovery
We present BayesMD, a Bayesian Motif Discovery model with several new features. Three different types of biological a priori knowledge are built into the framework in a modular fa...
Man-Hung Eric Tang, Anders Krogh, Ole Winther
NAR
1998
102views more  NAR 1998»
13 years 8 months ago
The Yeast Protein Database (YPD): a curated proteome database for Saccharomyces cerevisiae
The Yeast Protein Database (YPD) is a curated database for the proteome of Saccharomyces cerevisiae. It consists of ∼6000 Yeast Protein Reports, one for each of the known or pre...
Peter E. Hodges, William E. Payne, James I. Garrel...
BMCBI
2002
214views more  BMCBI 2002»
13 years 8 months ago
Automated modelling of signal transduction networks
Background: Intracellular signal transduction is achieved by networks of proteins and small molecules that transmit information from the cell surface to the nucleus, where they ul...
Martin Steffen, Allegra Petti, John Aach, Patrik D...
BMCBI
2004
122views more  BMCBI 2004»
13 years 8 months ago
A comprehensive comparison of comparative RNA structure prediction approaches
Background: An increasing number of researchers have released novel RNA structure analysis and prediction algorithms for comparative approaches to structure prediction. Yet, indep...
Paul P. Gardner, Robert Giegerich