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» Mining sequential patterns for protein fold recognition
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DOLAP
2006
ACM
14 years 1 months ago
HYPE: mining hierarchical sequential patterns
Mining data warehouses is still an open problem as few approaches really take the specificities of this framework into account (e.g. multidimensionality, hierarchies, historized ...
Marc Plantevit, Anne Laurent, Maguelonne Teisseire
RECOMB
2005
Springer
14 years 8 months ago
Recognition of Binding Patterns Common to a Set of Protein Structures
We present a novel computational method, MultiBind, for recognition of binding patterns common to a set of protein structures. It is the first method which performs a multiple alig...
Maxim Shatsky, Alexandra Shulman-Peleg, Ruth Nussi...
BMCBI
2007
134views more  BMCBI 2007»
13 years 7 months ago
Automatic generation of 3D motifs for classification of protein binding sites
Background: Since many of the new protein structures delivered by high-throughput processes do not have any known function, there is a need for structure-based prediction of prote...
Jean-Christophe Nebel, Pawel Herzyk, David R. Gilb...
GECCO
2004
Springer
14 years 1 months ago
GA-Facilitated Knowledge Discovery and Pattern Recognition Optimization Applied to the Biochemistry of Protein Solvation
Abstract. The authors present a GA optimization technique for cosinebased k-nearest neighbors classification that improves predictive accuracy in a class-balanced manner while sim...
Michael R. Peterson, Travis E. Doom, Michael L. Ra...
COMPLIFE
2005
Springer
14 years 1 months ago
MAPPIS: Multiple 3D Alignment of Protein-Protein Interfaces
A protein-protein interface (PPI) is defined by a pair of regions of two interacting protein molecules that are linked by non-covalent bonds. Recognition of conserved 3D patterns ...
Alexandra Shulman-Peleg, Maxim Shatsky, Ruth Nussi...