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HPCA
2006
IEEE
14 years 10 months ago
Last level cache (LLC) performance of data mining workloads on a CMP - a case study of parallel bioinformatics workloads
With the continuing growth in the amount of genetic data, members of the bioinformatics community are developing a variety of data-mining applications to understand the data and d...
Aamer Jaleel, Matthew Mattina, Bruce L. Jacob
CIKM
2006
Springer
14 years 1 months ago
CP/CV: concept similarity mining without frequency information from domain describing taxonomies
Domain specific ontologies are heavily used in many applications. For instance, these form the bases on which similarity/dissimilarity between keywords are extracted for various k...
Jong Wook Kim, K. Selçuk Candan
ISMB
2000
13 years 11 months ago
Mining for Putative Regulatory Elements in the Yeast Genome Using Gene Expression Data
We have developed a set of methods and tools for automatic discovery of putative regulatory signals in genome sequences. The analysis pipeline consists of gene expression data clu...
Jaak Vilo, Alvis Brazma, Inge Jonassen, Alan J. Ro...
BMCBI
2008
95views more  BMCBI 2008»
13 years 10 months ago
Mining protein networks for synthetic genetic interactions
Background: The local connectivity and global position of a protein in a protein interaction network are known to correlate with some of its functional properties, including its e...
Sri R. Paladugu, Shan Zhao, Animesh Ray, Alpan Rav...
BMCBI
2008
142views more  BMCBI 2008»
13 years 10 months ago
Microarray data mining: A novel optimization-based approach to uncover biologically coherent structures
Background: DNA microarray technology allows for the measurement of genome-wide expression patterns. Within the resultant mass of data lies the problem of analyzing and presenting...
Meng Piao Tan, Erin N. Smith, James R. Broach, Chr...