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» Modelling Developmental Regulatory Networks
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AUTOMATICA
2010
127views more  AUTOMATICA 2010»
13 years 6 months ago
Partitioning datasets based on equalities among parameters
When a phenomenon is described by a parametric model and multiple datasets are available, a key problem in statistics is to discover which datasets are characterized by the same p...
Riccardo Porreca, Giancarlo Ferrari-Trecate
DFG
2007
Springer
14 years 2 months ago
PointCloudXplore 2: Visual Exploration of 3D Gene Expression
: To better understand how developmental regulatory networks are defined in the genome sequence, the Berkeley Drosophila Transcription Network Project (BDNTP) has developed a suit...
Oliver Rübel, Gunther H. Weber, Min-Yu Huang,...
ALIFE
2008
13 years 7 months ago
Exploring the Operational Characteristics of Inference Algorithms for Transcriptional Networks by Means of Synthetic Data
The development of structure-learning algorithms for gene regulatory networks depends heavily on the availability of synthetic data sets that contain both the original network and ...
Koenraad Van Leemput, Tim Van den Bulcke, Thomas D...
JGO
2011
89views more  JGO 2011»
12 years 11 months ago
Model building using bi-level optimization
Abstract In many problems from different disciplines such as engineering, physics, medicine, and biology, a series of experimental data is used in order to generate a model that ca...
Georges K. Saharidis, Ioannis P. Androulakis, Mari...
RECOMB
2007
Springer
14 years 8 months ago
A Feature-Based Approach to Modeling Protein-DNA Interactions
Transcription factor (TF) binding to its DNA target site is a fundamental regulatory interaction. The most common model used to represent TF binding specificities is a position spe...
Eilon Sharon, Eran Segal