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» Modelling Variability for System Families
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LCTRTS
2005
Springer
14 years 1 months ago
Cache aware optimization of stream programs
Effective use of the memory hierarchy is critical for achieving high performance on embedded systems. We focus on the class of streaming applications, which is increasingly preval...
Janis Sermulins, William Thies, Rodric M. Rabbah, ...
SIAMSC
2008
113views more  SIAMSC 2008»
13 years 7 months ago
An Efficient and Robust Method for Simulating Two-Phase Gel Dynamics
We develop a computational method for simulating models of gel dynamics where the gel is described by two phases, a networked polymer and a fluid solvent. The models consist of tra...
Grady B. Wright, Robert D. Guy, Aaron L. Fogelson
KCAP
2009
ACM
14 years 2 months ago
Biomedical knowledge engineering tools based on experimental design: a case study based on neuroanatomical tract-tracing experim
Curating information from the literature for storage in databases is a crucial task in biological research, and many groups assign a particular person or team to that process. We ...
Gully A. P. C. Burns, Thomas A. Russ
BMCBI
2008
166views more  BMCBI 2008»
13 years 7 months ago
Learning transcriptional regulatory networks from high throughput gene expression data using continuous three-way mutual informa
Background: Probability based statistical learning methods such as mutual information and Bayesian networks have emerged as a major category of tools for reverse engineering mecha...
Weijun Luo, Kurt D. Hankenson, Peter J. Woolf
BMCBI
2007
154views more  BMCBI 2007»
13 years 7 months ago
Inferring biological networks with output kernel trees
Background: Elucidating biological networks between proteins appears nowadays as one of the most important challenges in systems biology. Computational approaches to this problem ...
Pierre Geurts, Nizar Touleimat, Marie Dutreix, Flo...