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» Models and Methods in Comparative Genomics
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HIPC
2009
Springer
13 years 8 months ago
Comparing the performance of clusters, Hadoop, and Active Disks on microarray correlation computations
Abstract--Microarray-based comparative genomic hybridization (aCGH) offers an increasingly fine-grained method for detecting copy number variations in DNA. These copy number variat...
Jeffrey A. Delmerico, Nathanial A. Byrnes, Andrew ...
NAR
2011
183views Computer Vision» more  NAR 2011»
13 years 1 months ago
IGRhCellID: integrated genomic resources of human cell lines for identification
Cell line identification is emerging as an essential method for every cell line user in research community to avoid using misidentified cell lines for experiments and publications...
Cheng-Kai Shiau, De-Leung Gu, Chian-Feng Chen, Chi...
SSDBM
2010
IEEE
220views Database» more  SSDBM 2010»
14 years 3 months ago
Prefix Tree Indexing for Similarity Search and Similarity Joins on Genomic Data
Similarity search and similarity join on strings are important for applications such as duplicate detection, error detection, data cleansing, or comparison of biological sequences....
Astrid Rheinländer, Martin Knobloch, Nicky Ho...
ISMB
2000
14 years 10 days ago
A Probabilistic Learning Approach to Whole-Genome Operon Prediction
We present a computational approach to predicting operons in the genomes of prokaryotic organisms. Our approach uses machine learning methods to induce predictive models for this ...
Mark Craven, David Page, Jude W. Shavlik, Joseph B...
BMCBI
2005
109views more  BMCBI 2005»
13 years 11 months ago
Genome comparison without alignment using shortest unique substrings
Background: Sequence comparison by alignment is a fundamental tool of molecular biology. In this paper we show how a number of sequence comparison tasks, including the detection o...
Bernhard Haubold, Nora Pierstorff, Friedrich M&oum...