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BMCBI
2006
137views more  BMCBI 2006»
13 years 10 months ago
Genome BLAST distance phylogenies inferred from whole plastid and whole mitochondrion genome sequences
Background: Phylogenetic methods which do not rely on multiple sequence alignments are important tools in inferring trees directly from completely sequenced genomes. Here, we exte...
Alexander F. Auch, Stefan R. Henz, Barbara R. Holl...
BMCBI
2006
149views more  BMCBI 2006»
13 years 10 months ago
HeatMapper: powerful combined visualization of gene expression profile correlations, genotypes, phenotypes and sample characteri
Background: Accurate interpretation of data obtained by unsupervised analysis of large scale expression profiling studies is currently frequently performed by visually combining s...
Roel G. W. Verhaak, Mathijs A. Sanders, Maarten A....
BMCBI
2006
137views more  BMCBI 2006»
13 years 10 months ago
Bounded search for de novo identification of degenerate cis-regulatory elements
Background: The identification of statistically overrepresented sequences in the upstream regions of coregulated genes should theoretically permit the identification of potential ...
Jonathan M. Carlson, Arijit Chakravarty, Radhika S...
CORR
2006
Springer
112views Education» more  CORR 2006»
13 years 10 months ago
Pull-Based Data Broadcast with Dependencies: Be Fair to Users, not to Items
Broadcasting is known to be an efficient means of disseminating data in wireless communication environments (such as Satellite, mobile phone networks,...). It has been recently ob...
Julien Robert, Nicolas Schabanel
BMCBI
2007
164views more  BMCBI 2007»
13 years 10 months ago
SEARCHPATTOOL: a new method for mining the most specific frequent patterns for binding sites with application to prokaryotic DNA
Background: Computational methods to predict transcription factor binding sites (TFBS) based on exhaustive algorithms are guaranteed to find the best patterns but are often limite...
Fathi Elloumi, Martha Nason
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