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144
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WWW
2001
ACM
16 years 4 months ago
IEPAD: information extraction based on pattern discovery
The research in information extraction (IE) regards the generation of wrappers that can extract particular information from semistructured Web documents. Similar to compiler gener...
Chia-Hui Chang, Shao-Chen Lui
239
Voted
SASP
2009
IEEE
291views Hardware» more  SASP 2009»
15 years 10 months ago
A parameterisable and scalable Smith-Waterman algorithm implementation on CUDA-compatible GPUs
—This paper describes a multi-threaded parallel design and implementation of the Smith-Waterman (SM) algorithm on compute unified device architecture (CUDA)-compatible graphic pr...
Cheng Ling, Khaled Benkrid, Tsuyoshi Hamada
144
Voted
BMCBI
2006
130views more  BMCBI 2006»
15 years 3 months ago
An interactive visualization tool to explore the biophysical properties of amino acids and their contribution to substitution ma
Background: Quantitative descriptions of amino acid similarity, expressed as probabilistic models of evolutionary interchangeability, are central to many mainstream bioinformatic ...
Blazej Bulka, Marie desJardins, Stephen J. Freelan...
156
Voted
BMCBI
2007
113views more  BMCBI 2007»
15 years 3 months ago
Statistical power of phylo-HMM for evolutionarily conserved element detection
Background: An important goal of comparative genomics is the identification of functional elements through conservation analysis. Phylo-HMM was recently introduced to detect conse...
Xiaodan Fan, Jun Zhu, Eric E. Schadt, Jun S. Liu
152
Voted
BMCBI
2008
147views more  BMCBI 2008»
15 years 3 months ago
Transmembrane helix prediction using amino acid property features and latent semantic analysis
Background: Prediction of transmembrane (TM) helices by statistical methods suffers from lack of sufficient training data. Current best methods use hundreds or even thousands of f...
Madhavi Ganapathiraju, Narayanas Balakrishnan, Raj...